ChipST2C Version 1.0
Run date:3/27/2005
(C) 2004-5	Peterson Lab	Baylor College of Medicine
http://www.chipst2c.org
Testing for significant fold ratio between array groups Class 1 and Class 2
T-tests based on raw data
Number of total genes tested: 14
Number of genes with p-value < 1.0000: 14
Number of genes with abs(fold)>= 0: 14
Welch-statistic assumes unequal variance between groups
Adjusted d.f. used for t-test
Randomization test not performed
No adjustment made for multiple tests
SAMPLE SIZES
n	n_1	n_2	avg_1	avg_2	avg_1 - avg_2	s.d.	t-statistic	d.f.	d.f.(adj)	p-value	q-value	FDR	Mean_Perm_t	Permutations	Gene	BRCA1_s1996_1	BRCA1_s1822_5	BRCA1_s1714_3	BRCA1_s1224_7	BRCA1_s1252_2	BRCA1_s1510_4	BRCA1_s1905_6	BRCA2_s1900_10	BRCA2_s1787_9	BRCA2_s1721_8	BRCA2_s1486_10	BRCA2_s1816_13	BRCA2_s1616_14	BRCA2_s1063_11	BRCA2_s1936_12
15	7	8	2.405714286	1.075	1.330714286	0.169000664	7.874018083	13	12.861	2.85E-06	2.85E-06	0	0	1	interleukin enhancer binding factor 2; 45kD_42888_UG4H12	2.58	2.02	2.06	2.64	2.28	2.9	2.36	1.41	1.17	0.91	1.21	0.54	0.76	1.55	1.05
15	7	8	1.658571429	0.6925	0.966071429	0.143435585	6.735228426	13	12.758	1.53E-05	1.53E-05	0	0	1	Major histocompatibility complex; class II; Y box-binding protein I; DNA-binding protein B_949932_HV22H6	1.25	1.85	1.68	1.85	1.45	1.49	2.04	0.9	0.8	1.06	0.95	0.55	0.24	0.54	0.5
15	7	8	1.572857143	0.85125	0.721607143	0.178892658	4.033743771	13	7.347	0.004496947	0.004496947	0	0	1	v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1_133178_HV8C7	1.8	2.03	1.22	1.46	1.48	2.14	0.88	0.72	0.85	0.77	1.22	0.74	0.77	0.84	0.9
15	7	8	1.181428571	3.01	-1.828571429	0.509682107	-3.587670438	13	10.228	0.004779298	0.004779298	0	0	1	v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 2 (neuro/glioblastoma derived oncogene homolog)_783729_HV15B6	1.28	2.08	0.55	0.5	1.31	1.77	0.78	4.38	1.92	1.6	4.59	1.63	4.41	2.57	2.98
15	7	8	2.722857143	4.8775	-2.154642857	0.71460954	-3.015133073	13	12.758	0.010158371	0.010158371	0	0	1	low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor)_810551_HV6A8	1.58	1.64	4.16	2.66	5.06	2.34	1.62	4.11	4.86	3.57	4.54	5.37	3.01	6.94	6.62
15	7	8	1.417142857	0.885	0.532142857	0.176678539	3.011926974	13	12.684	0.010278247	0.010278247	0	0	1	golgi autoantigen; golgin subfamily a; 4_796137_HV20H5	1.57	1.69	0.82	1.62	1.47	1.37	1.38	1.04	1.73	0.92	0.94	0.72	0.54	0.49	0.7
15	7	8	3.201428571	1.6075	1.593928571	0.560923945	2.84161264	13	7.161	0.024432982	0.024432982	0	0	1	ESTs; Highly similar to 45kDa splicing factor [H.sapiens]_202034_HV28G8	2.1	5.59	1.4	3.12	2.72	3.01	4.47	2.05	1.46	2.14	1.78	2	0.94	0.96	1.53
15	7	8	1.234285714	0.86875	0.365535714	0.142773301	2.560252589	13	12.071	0.025013164	0.025013164	0	0	1	single-stranded DNA-binding protein_125183_HV15G8	1.04	1.5	0.98	1.23	1.4	1.05	1.44	1.12	0.97	1.34	1.15	0.78	0.36	0.58	0.65
15	7	8	0.924285714	1.51375	-0.589464286	0.26400361	-2.232788733	13	9.91	0.050137452	0.050137452	0	0	1	ceroid-lipofuscinosis; neuronal 3; juvenile (Batten; Spielmeyer-Vogt disease)_27473_UG1G9	0.68	1.19	0.48	1.01	1.06	1.31	0.74	1.18	1.26	1.44	1.03	0.91	2.97	2.01	1.31
15	7	8	2.337142857	1.44625	0.890892857	0.411620881	2.164352924	13	12.774	0.050417552	0.050417552	0	0	1	chromodomain helicase DNA binding protein 2_243580_HV10G4	2.77	3.67	1.51	2.28	2.76	1.49	1.88	2.43	1.67	2.52	1.9	1.14	0.47	0.7	0.74
15	7	8	1.885714286	2.42875	-0.543035714	0.298712995	-1.817917943	13	10.324	0.099255549	0.099255549	0	0	1	carbonyl reductase 1_37435_UG3G4	1.43	2.82	0.85	1.6	2.46	2.22	1.82	2.34	2.52	2.89	2.19	3.28	1.94	2.12	2.15
15	7	8	3.158571429	1.85625	1.302321429	0.715770919	1.819466808	13	9.845	0.100374939	0.100374939	0	0	1	ESTs_133180_HV40F6	3.47	3.46	1.08	2.18	4.28	5.87	1.77	2.03	1.32	1.4	3.97	2.54	1.07	0.73	1.79
15	7	8	1.212857143	0.97	0.242857143	0.176994946	1.372113433	13	12.993	0.198238573	0.198238573	0	0	1	SEC13 (S. cerevisiae)-like 1_897636_HV22E11	1.4	0.93	1.58	0.89	1.36	0.84	1.49	0.95	1.01	0.92	1.08	0.72	0.5	1.77	0.81
15	7	8	0.69	0.90375	-0.21375	0.155060712	-1.378492316	13	10.647	0.200571571	0.200571571	0	0	1	TNF receptor-associated factor 4_898312_HV24B5	0.41	1.03	0.77	0.69	0.66	0.53	0.74	0.69	0.83	0.67	0.65	0.77	1.03	1.81	0.78