ChipST2C Version 1.0
Run date:3/27/2005
(C) 2004-5	Peterson Lab	Baylor College of Medicine
http://www.chipst2c.org
Mann-Whitney (MW) tests for independent array groups: Class 1 and Class 2
MW-tests based on raw data
Number of total genes tested: 14
Number of genes with p-value < 1.0000: 14
Randomization test not performed
No adjustment made for multiple tests
Number of significant genes: 14
SAMPLE SIZES
n	n_1	n_2	R_1	R_2	U_1	U_2	min(U_1;U_2)	Avg U	sd(U)	Z	p-value(one-tailed)	q-value	FDR	Mean_Perm_Z	Permutations	Gene	BRCA1_s1996_1	BRCA1_s1822_5	BRCA1_s1714_3	BRCA1_s1224_7	BRCA1_s1252_2	BRCA1_s1510_4	BRCA1_s1905_6	BRCA2_s1900_10	BRCA2_s1787_9	BRCA2_s1721_8	BRCA2_s1486_10	BRCA2_s1816_13	BRCA2_s1616_14	BRCA2_s1063_11	BRCA2_s1936_12
15	7	8	84	36	0	56	0	28	8.6409876	-3.24037035	0.002555503	0.0025555	0	0	1	interleukin enhancer binding factor 2; 45kD_42888_UG4H12	2.58	2.02	2.06	2.64	2.28	2.9	2.36	1.41	1.17	0.91	1.21	0.54	0.76	1.55	1.05
15	7	8	84	36	0	56	0	28	8.6409876	-3.24037035	0.002555503	0.0025555	0	0	1	Major histocompatibility complex; class II; Y box-binding protein I; DNA-binding protein B_949932_HV22H6	1.25	1.85	1.68	1.85	1.45	1.49	2.04	0.9	0.8	1.06	0.95	0.55	0.24	0.54	0.5
15	7	8	81.5	38.5	2.5	53.5	2.5	28	8.6409876	-2.95105157	0.006344254	0.00634425	0	0	1	v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1_133178_HV8C7	1.8	2.03	1.22	1.46	1.48	2.14	0.88	0.72	0.85	0.77	1.22	0.74	0.77	0.84	0.9
15	7	8	33	87	51	5	5	28	8.6409876	-2.66173279	0.014517276	0.01451728	0	0	1	v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 2 (neuro/glioblastoma derived oncogene homolog)_783729_HV15B6	1.28	2.08	0.55	0.5	1.31	1.77	0.78	4.38	1.92	1.6	4.59	1.63	4.41	2.57	2.98
15	7	8	77	43	7	49	7	28	8.6409876	-2.43027776	0.026556946	0.02655695	0	0	1	ESTs; Highly similar to 45kDa splicing factor [H.sapiens]_202034_HV28G8	2.1	5.59	1.4	3.12	2.72	3.01	4.47	2.05	1.46	2.14	1.78	2	0.94	0.96	1.53
15	7	8	36	84	48	8	8	28	8.6409876	-2.31455025	0.035232949	0.03523295	0	0	1	low density lipoprotein-related protein 1 (alpha-2-macroglobulin receptor)_810551_HV6A8	1.58	1.64	4.16	2.66	5.06	2.34	1.62	4.11	4.86	3.57	4.54	5.37	3.01	6.94	6.62
15	7	8	74	46	10	46	10	28	8.6409876	-2.08309522	0.059688142	0.05968814	0	0	1	golgi autoantigen; golgin subfamily a; 4_796137_HV20H5	1.57	1.69	0.82	1.62	1.47	1.37	1.38	1.04	1.73	0.92	0.94	0.72	0.54	0.49	0.7
15	7	8	74	46	10	46	10	28	8.6409876	-2.08309522	0.059688142	0.05968814	0	0	1	single-stranded DNA-binding protein_125183_HV15G8	1.04	1.5	0.98	1.23	1.4	1.05	1.44	1.12	0.97	1.34	1.15	0.78	0.36	0.58	0.65
15	7	8	38.5	81.5	45.5	10.5	10.5	28	8.6409876	-2.02523147	0.067560218	0.06756022	0	0	1	ceroid-lipofuscinosis; neuronal 3; juvenile (Batten; Spielmeyer-Vogt disease)_27473_UG1G9	0.68	1.19	0.48	1.01	1.06	1.31	0.74	1.18	1.26	1.44	1.03	0.91	2.97	2.01	1.31
15	7	8	71	49	13	43	13	28	8.6409876	-1.73591269	0.119790267	0.11979027	0	0	1	chromodomain helicase DNA binding protein 2_243580_HV10G4	2.77	3.67	1.51	2.28	2.76	1.49	1.88	2.43	1.67	2.52	1.9	1.14	0.47	0.7	0.74
15	7	8	70	50	14	42	14	28	8.6409876	-1.62018517	0.14743493	0.14743493	0	0	1	ESTs_133180_HV40F6	3.47	3.46	1.08	2.18	4.28	5.87	1.77	2.03	1.32	1.4	3.97	2.54	1.07	0.73	1.79
15	7	8	43	77	41	15	15	28	8.6409876	-1.50445766	0.179302065	0.17930207	0	0	1	carbonyl reductase 1_37435_UG3G4	1.43	2.82	0.85	1.6	2.46	2.22	1.82	2.34	2.52	2.89	2.19	3.28	1.94	2.12	2.15
15	7	8	44.5	75.5	39.5	16.5	16.5	28	8.6409876	-1.33086639	0.235280588	0.23528059	0	0	1	TNF receptor-associated factor 4_898312_HV24B5	0.41	1.03	0.77	0.69	0.66	0.53	0.74	0.69	0.83	0.67	0.65	0.77	1.03	1.81	0.78
15	7	8	66	54	18	38	18	28	8.6409876	-1.15727512	0.301101613	0.30110161	0	0	1	SEC13 (S. cerevisiae)-like 1_897636_HV22E11	1.4	0.93	1.58	0.89	1.36	0.84	1.49	0.95	1.01	0.92	1.08	0.72	0.5	1.77	0.81