ChipST2C Version 1.0
Run date:3/27/2005
(C) 2004-5	Peterson Lab	Baylor College of Medicine
http://www.chipst2c.org
Permutation-based F-test
Type I Error level (alpha): 1.0000
permutations: 1
Number of genes tested: 14
Randomization test not performed
No adjustment made for multiple tests
Number of genes significant (p<1.0000):14
	EWS	BL	NB	RMS	EWS	BL	NB	RMS
N	N_1	N_2	N_3	N_4	Avg_1	Avg_2	Avg_3	Avg_4	p-value	q-value	FDR	SST	numDF	MST	SSE	denDF	MSE	F-statistic	Mean_Perm_F	Permutations	Gene	EWS-T1	EWS-T2	EWS-T3	EWS-T4	EWS-T6	EWS-T7	EWS-T9	EWS-T11	EWS-T12	EWS-T13	EWS-T14	EWS-T15	EWS-T19	EWS-C8	EWS-C3	EWS-C2	EWS-C4	EWS-C6	EWS-C9	EWS-C7	EWS-C1	EWS-C11	EWS-C10	BL-C5	BL-C6	BL-C7	BL-C8	BL-C1	BL-C2	BL-C3	BL-C4	NB-C1	NB-C2	NB-C3	NB-C6	NB-C12	NB-C7	NB-C4	NB-C5	NB-C10	NB-C11	NB-C9	NB-C8	RMS-C4	RMS-C3	RMS-C9	RMS-C2	RMS-C5	RMS-C6	RMS-C7	RMS-C8	RMS-C10	RMS-C11	RMS-T1	RMS-T4	RMS-T2	RMS-T6	RMS-T7	RMS-T8	RMS-T5	RMS-T3	RMS-T10	RMS-T11
63	23	8	12	20	0.261743478	1.0384625	0.165891667	0.240635	4.48E-21	4.48E-21	0	4.603561534	3	1.534520511	1.09882301	59	0.018624119	82.39426127	0	1	Wiskott-Aldrich syndrome (ecezema-thrombocytopenia)_236282	0.1844	0.2833	0.2713	0.3253	0.2585	0.2248	0.4035	0.3533	0.1493	0.2142	0.1557	0.1942	0.3654	0.3325	0.1205	0.1557	0.3315	0.5093	0.4954	0.1288	0.2411	0.1331	0.189	0.7904	0.9508	1.3086	1.3896	0.7992	0.8609	0.9478	1.2604	0.1603	0.2011	0.2589	0.0713	0.0974	0.1823	0.3159	0.1511	0.2412	0.0364	0.1992	0.0756	0.5158	0.2974	0.2744	0.1735	0.1511	0.136	0.2693	0.162	0.0756	0.1011	0.2649	0.2956	0.5903	0.1521	0.1647	0.2031	0.3699	0.2915	0.1499	0.1745
63	23	8	12	20	3.481630435	0.221425	0.360258333	0.617975	1.18E-20	1.18E-20	0	134.2853042	3	44.76176807	33.38948863	59	0.565923536	79.09508124	0	1	Fc fragment of IgG; receptor; transporter; alpha_770394	4.0134	2.3451	4.1262	5.1079	3.9941	3.4064	2.6916	2.3477	3.6247	2.5821	3.1955	4.1509	4.6412	4.5169	0.4944	1.7248	2.347	4.0513	5.2958	5.2135	3.2644	3.6355	3.3071	0.1647	0.338	0.0669	0.1433	0.0967	0.3616	0.4264	0.1738	0.308	0.3533	0.4402	0.3059	0.2557	0.4325	0.318	0.3297	0.4416	0.4786	0.4782	0.1814	0.3391	0.5027	1.4465	0.7983	0.1634	0.3339	0.316	0.3505	0.5697	0.6855	0.282	0.9931	0.3472	0.8648	1.4401	0.5444	0.6624	0.6417	0.8647	0.2135
63	23	8	12	20	1.8109	0.124925	0.998658333	0.71923	0.004963733	0.004963733	0	22.25158321	3	7.417194405	92.33559121	59	1.56501002	4.739390999	0	1	annexin A1_208718	3.4296	2.2009	1.6881	4.1756	3.0405	0.329	0.9198	0.848	1.3026	3.5814	1.1629	1.7367	0.6336	0.4531	4.9368	6.0212	1.041	0.9217	0.8264	1.0096	0.6779	0.5496	0.1647	0.1655	0.0772	0.1087	0.1015	0.1105	0.1504	0.0932	0.1924	0.0948	3.8927	1.0259	0.6702	0.1271	4.2105	0.0715	0.0705	0.1663	0.9384	0.566	0.15	0.1023	0.2513	0.1688	1.361	0.0857	0.0746	0.2002	3.5375	0.3039	0.327	1.1758	0.7503	1.0354	0.9447	0.7794	0.5067	0.7116	0.6825	0.1417	1.2442
63	23	8	12	20	0.90993913	0.2413125	1.8907	1.27628	0.005038209	0.005038209	0	14.8036536	3	4.9345512	61.60015602	59	1.044070441	4.726262718	0	1	matrix metalloproteinase 2 (gelatinase A; 72kD gelatinase; 72kD type IV collagenase)_1474174	0.552	0.487	1.2167	1.2098	1.855	0.5032	0.7151	0.8308	0.7622	5.5433	0.6322	1.6036	1.2185	0.214	0.4115	0.2492	0.5228	0.4836	0.4694	1.0283	0.0408	0.1909	0.1887	0.2868	0.2057	0.1955	0.1396	0.3051	0.3364	0.2169	0.2445	1.3332	3.4272	2.4484	1.3045	0.527	3.936	0.8467	1.3392	1.1737	3.277	1.9651	1.1104	0.2693	1.068	1.4694	1.0772	0.3608	0.1385	1.6236	0.82	0.6704	1.4989	0.5894	1.6953	0.4449	1.9968	1.7326	4.5867	1.2229	0.6382	2.929	0.6937
63	23	8	12	20	0.515469565	0.3735	0.60395	0.414355	0.009935429	0.009935429	0	0.38991902	3	0.129973007	1.855585968	59	0.03145061	4.132606913	0	1	membrane fatty acid (lipid) desaturase_324891	0.3899	0.7067	0.4545	0.3432	0.599	0.3503	0.7519	0.3867	0.4141	0.5013	0.2738	0.4685	0.2612	0.7841	0.6533	0.937	0.7962	0.4489	0.421	0.6206	0.5274	0.4523	0.3139	0.285	0.5936	0.4581	0.2571	0.2757	0.2854	0.2679	0.5652	0.6347	0.6762	0.5653	0.5455	0.7752	0.9567	0.4538	0.5078	0.4238	0.4224	0.6116	0.6744	0.2875	0.4057	0.1967	0.4777	0.2332	0.6532	0.5689	0.7384	0.3141	0.5382	0.6427	0.2955	0.7455	0.0552	0.4447	0.3173	0.4528	0.4628	0.2551	0.2019
63	23	8	12	20	0.628717391	0.12445	0.290366667	1.065685	0.010145508	0.010145508	0	7.22026953	3	2.40675651	34.51208381	59	0.584950573	4.114461326	0	1	collagen; type V; alpha 2_796613	0.4118	0.5939	0.7967	4.593	0.7386	0.3141	0.6591	0.3454	0.1999	0.7188	0.8249	0.3539	0.45	0.1809	1.2643	0.8346	0.2515	0.1225	0.1193	0.1452	0.2553	0.1337	0.1531	0.1092	0.2105	0.066	0.074	0.1321	0.142	0.1004	0.1614	0.1165	0.5219	0.2325	0.3433	0.0967	0.6219	0.1137	0.0868	0.0966	0.4387	0.6519	0.1639	0.0069	0.2289	0.0071	1.7247	0.102	0.093	1.3791	0.1795	0.3365	2.9883	0.8975	1.425	1.0058	1.8926	1.15	2.1732	1.7993	1.0208	2.5074	0.3961
63	23	8	12	20	1.658630435	1.2120375	1.023066667	1.11415	0.025009695	0.025009695	0	4.62713005	3	1.542376683	27.25147754	59	0.46188945	3.339276712	0	1	phosphorylase; glycogen; muscle (McArdle syndrome; glycogen storage disease type V)_759173	1.8315	2.318	1.812	0.7246	1.1547	0.8832	1.3914	1.0342	0.8571	1.0338	0.7344	0.4667	3.215	0.6186	3.9757	3.6989	1.9817	1.9295	1.9405	2.2274	2.5508	1.0582	0.7106	1.5168	0.7593	0.8509	0.8763	1.4374	1.3073	1.7446	1.2037	1.2647	0.7941	1.0811	0.858	1.053	0.8653	1.1029	0.6065	0.9333	1.157	1.0556	1.5053	0.7331	0.9399	0.7764	0.8706	0.8996	0.6969	0.6016	1.8429	0.5518	1.2898	1.6318	2.0379	1.7647	1.1009	1.3228	0.909	0.3748	1.3091	1.0927	1.5367
63	23	8	12	20	0.40506087	0.5463875	0.237083333	0.453495	0.025206397	0.025206397	0	0.54518962	3	0.181729873	3.21732581	59	0.054530946	3.332600788	0	1	mevalonate (diphospho) decarboxylase_280934	0.2353	0.3185	0.5112	0.1516	0.4868	0.417	0.6619	0.422	0.3997	0.4241	0.6424	0.5026	0.5256	0.7268	0.3043	0.4095	0.4624	0.2612	0.2456	0.2847	0.2663	0.3565	0.3004	0.2035	0.5037	0.3464	0.3171	0.3776	1.0846	0.5816	0.9566	0.8696	0.2379	0.2153	0.1166	0.0494	0.116	0.383	0.3375	0.2319	0.0676	0.1123	0.1079	0.5888	0.8222	0.3945	0.1541	0.4759	0.7876	0.1601	0.6745	0.0707	0.2894	0.4174	0.5302	1.1877	0.0471	0.2213	0.4327	0.5159	0.5845	0.2819	0.4334
63	23	8	12	20	0.577569565	0.2829875	0.4015	0.48908	0.049972181	0.049972181	0	0.604927671	3	0.201642557	4.322901949	59	0.073269525	2.752065856	0	1	ESTs_191743	0.4548	0.2902	0.3783	0.1045	0.5564	0.4407	0.4687	0.5514	0.5911	0.5016	0.6823	0.7497	0.3271	1.0191	0.8775	0.5773	0.1387	0.9623	0.9051	0.6119	0.1057	0.7884	1.2013	0.2855	0.3028	0.227	0.3067	0.1832	0.406	0.2911	0.2616	0.446	0.5629	0.5148	0.1583	0.2217	0.1447	0.3356	0.7803	0.7335	0.584	0.2169	0.1193	0.0156	0.7886	1.101	0.2516	0.7357	0.3857	0.4826	0.879	0.3911	0.4642	0.3737	0.3445	0.3898	0.0091	0.2589	0.3653	1.0001	0.1548	0.7911	0.5992
63	23	8	12	20	1.238191304	1.0566625	1.839233333	1.64445	0.050185843	0.050185843	0	4.839155135	3	1.613051712	34.62668983	59	0.586893048	2.748459395	0	1	protein phosphatase 1; catalytic subunit; beta isoform_132911	0.4159	0.7679	0.4913	2.295	2.2223	3.4833	0.9774	0.9847	2.1517	1.1572	1.9762	1.6878	1.66	0.5287	0.6715	1.413	0.8542	0.6148	0.5776	1.3734	0.9652	0.5417	0.6676	1.9981	1.5157	1.7293	1.2756	0.3962	0.2748	0.3762	0.8874	0.8578	1.8339	1.2809	1.6576	1.026	2.0875	1.7097	3.2903	1.4258	2.6664	1.9833	2.2516	2.034	2.5521	1.2505	1.8101	1.4425	1.9485	2.9702	1.4022	3.0497	1.6788	1.3374	0.32	0.5825	2.9365	2.4137	1.4638	1.4631	0.815	1.0676	0.3508
63	23	8	12	20	0.875069565	0.8145875	0.58055	0.686355	0.09978923	0.09978923	0	0.81860068	3	0.272866893	7.426089197	59	0.125865919	2.167917229	0	1	transmembrane glycoprotein_510542	0.8177	0.6514	0.6281	0.3322	0.8515	0.7833	1.1911	0.8924	0.8877	0.684	1.3937	1.3349	0.625	0.8564	0.6494	0.749	1.1877	1.3503	1.1213	0.9942	0.4797	0.5829	1.0827	0.7488	0.582	0.6222	1.0319	0.4832	0.5878	0.8454	1.6154	1.5684	0.5177	0.4869	0.3254	0.3445	0.3134	0.594	0.9969	0.4834	0.44	0.3302	0.5658	0.245	0.8683	1.0364	0.4889	0.7217	0.3355	0.5707	1.1005	0.3809	0.7296	1.4496	0.6012	1.4885	0.1974	0.6949	0.9476	0.4965	1.1199	0.1028	0.1512
63	23	8	12	20	0.450504348	0.276975	0.45135	0.40095	0.100593693	0.100593693	0	0.200925725	3	0.066975242	1.828462085	59	0.030990883	2.161127265	0	1	ESTs_773203	0.3749	0.3159	0.2967	0.4287	0.4027	0.2838	0.6741	0.7142	0.468	0.1529	0.5172	0.4185	0.4534	0.7835	0.2558	0.4341	0.3473	0.4768	0.4193	0.352	0.1936	0.9088	0.6894	0.1148	0.2703	0.3778	0.5088	0.264	0.1468	0.2748	0.2585	0.311	0.5639	0.441	0.4423	0.3145	0.324	0.7074	0.7563	0.3393	0.3542	0.4822	0.3801	0.2913	0.7241	0.8507	0.2832	0.4968	0.6244	0.3884	0.2548	0.3941	0.1174	0.4413	0.418	0.3659	0.2765	0.131	0.3045	0.5828	0.2701	0.5156	0.2881
63	23	8	12	20	1.242095652	1.9046875	1.324483333	1.14553	0.19950626	0.19950626	0	3.478701772	3	1.159567257	43.35830728	59	0.734886564	1.577886049	0	1	lectin; galactoside-binding; soluble; 3 (galectin 3)_855910	1.2677	2.9708	0.7412	0.2568	0.545	1.3256	1.4483	0.7147	1.1692	0.238	0.3724	0.3294	1.9151	0.7461	1.444	0.7754	1.3206	2.3762	2.2333	0.9494